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MrBayes 3: Bayesian phylogenetic inference under mixed models
Bioinformatics · 2003 · Vol. 19(12) · pp. 1572–1574
Fredrik Ronquist✉(Uppsala University)John P. Huelsenbeck(University of California, San Diego)
Abstract
MrBayes 3 performs Bayesian phylogenetic analysis combining information from different data partitions or subsets evolving under different stochastic evolutionary models. This allows the user to analyze heterogeneous data sets consisting of different data types-e.g. morphological, nucleotide, and protein-and to explore a wide variety of structured models mixing partition-unique and shared parameters. The program employs MPI to parallelize Metropolis coupling on Macintosh or UNIX clusters.
Genomics and Phylogenetic StudiesGenetic diversity and population structureEvolution and Paleontology StudiesUnixPartition (number theory)Phylogenetic treeBayesian probabilityComputer scienceInferenceBiologyArtificial intelligenceSoftwareMathematics
MeSH terms
AlgorithmsBayes TheoremModels, GeneticPhylogenySoftwareStochastic ProcessesModels, StatisticalSequence AlignmentSequence HomologyEvolution, MolecularGene Expression Profiling
Funding
- National Science Foundation
- Vetenskapsrådet
- Division of Environmental Biology
Citations
29,210
FWCI
123.70
field-weighted impact
References
5
Percentile
100%
vs. same field & year
Citations per year
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References
Markov Chasin Monte Carlo Algorithms for the Bayesian Analysis of Phylogenetic Trees
Molecular Biology and Evolution · 1999 · 1,618 citations
MRBAYES: Bayesian inference of phylogeny
Bioinformatics · 2001 · 4,905 citations
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