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Phylogenetic and functional analysis of the Cation Diffusion Facilitator (CDF) family: improved signature and prediction of substrate specificity

BMC Genomics · 2007 · Vol. 8(1) · pp. 107–107
Barbara MontaniniDamien BlaudezSylvain JeandrozDale SandersMichel Chalot

Abstract

In the present study phylogenetic and functional analyses have allowed the identification of three major substrate-specific CDF groups. The metal selectivity of newly identified CDF transporters can be inferred by their position in one of these groups. The modified signature sequence proposed in this work can be used to identify new hypothetical CDF members.

Trace Elements in HealthHeavy Metal Exposure and ToxicityDrug Transport and Resistance MechanismsPhylogenetic treeMajor facilitator superfamilyBiologyConserved sequenceGeneticsSequence alignmentContext (archaeology)PhylogeneticsGene familyProtein family

MeSH terms

ArchaeaBiological TransportCadmiumCationsCobaltEukaryotic CellsHumansIronManganeseMolecular Sequence DataPhylogenyPlant ProteinsSubstrate SpecificityZincSequence Alignment

Funding

  • Agence Nationale de la Recherche
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References
Transformation of intact yeast cells treated with alkali cations
Journal of Bacteriology · 1983 · 7,672 citations
WebLogo: A Sequence Logo Generator: Figure 1
Genome Research · 2004 · 12,864 citations
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