article Open AccessTop 10% cited
Phylogenetic and functional analysis of the Cation Diffusion Facilitator (CDF) family: improved signature and prediction of substrate specificity
BMC Genomics · 2007 · Vol. 8(1) · pp. 107–107
Barbara Montanini✉(Interactions Arbres-Microorganismes)Damien Blaudez(Université de Lorraine)Sylvain Jeandroz(Université de Lorraine)Dale Sanders(University of York)Michel Chalot(Université de Lorraine)
Abstract
In the present study phylogenetic and functional analyses have allowed the identification of three major substrate-specific CDF groups. The metal selectivity of newly identified CDF transporters can be inferred by their position in one of these groups. The modified signature sequence proposed in this work can be used to identify new hypothetical CDF members.
Trace Elements in HealthHeavy Metal Exposure and ToxicityDrug Transport and Resistance MechanismsPhylogenetic treeMajor facilitator superfamilyBiologyConserved sequenceGeneticsSequence alignmentContext (archaeology)PhylogeneticsGene familyProtein family
MeSH terms
ArchaeaBiological TransportCadmiumCationsCobaltEukaryotic CellsHumansIronManganeseMolecular Sequence DataPhylogenyPlant ProteinsSubstrate SpecificityZincSequence Alignment
Funding
- Agence Nationale de la Recherche
Citations
422
FWCI
6.56
field-weighted impact
References
56
Percentile
97%
vs. same field & year
Citations per year
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References
Transformation of intact yeast cells treated with alkali cations
Journal of Bacteriology · 1983 · 7,672 citations
Phylogenetic Relationships within Cation Transporter Families of Arabidopsis
PLANT PHYSIOLOGY · 2001 · 1,255 citations
WebLogo: A Sequence Logo Generator: Figure 1
Genome Research · 2004 · 12,864 citations
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