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CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences

BMC Genomics · 2012 · Vol. 13(1) · pp. 715–715

Chang Liu✉(Chinese Academy of Medical Sciences & Peking Union Medical College)Linchun Shi(Chinese Academy of Medical Sciences & Peking Union Medical College)Yingjie Zhu(Chinese Academy of Medical Sciences & Peking Union Medical College)Haimei Chen(Chinese Academy of Medical Sciences & Peking Union Medical College)Jianhui Zhang(Chinese Academy of Medical Sciences & Peking Union Medical College)Xiaohan Lin(Chinese Academy of Medical Sciences & Peking Union Medical College)Xiaojun Guan(University of North Carolina at Chapel Hill)

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Abstract

CPGAVAS allows the semi-automatic and complete annotation of a chloroplast genome sequence, and the visualization, editing and analysis of the annotation results. It will become an indispensible tool for researchers studying chloroplast genomes. The software is freely accessible from http://www.herbalgenomics.org/cpgavas.

Genomics and Phylogenetic Studies Photosynthetic Processes and Mechanisms Genetic diversity and population structureGenBankGenomeAnnotationGenome projectBiologyGenome browserGene AnnotationComputational biologyWeb serverGenetics