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NAMD2: Greater Scalability for Parallel Molecular Dynamics

Journal of Computational Physics · 1999 · Vol. 151(1) · pp. 283–312
Laxmikant V. KaléRobert D. SkeelMilind BhandarkarRóbert BrunnerAttila GürsoyN. KrawetzJ. C. PhillipsAritomo ShinozakiKrishnan VaradarajanKlaus Schulten
Parallel Computing and Optimization TechniquesAdvanced Data Storage TechnologiesDistributed and Parallel Computing SystemsScalabilityComputer scienceWorkstationBenchmark (surveying)Parallel computingDomain decomposition methodsDistributed computingComputational scienceDecompositionInteroperability
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References
Reversible multiple time scale molecular dynamics
The Journal of Chemical Physics · 1992 · 3,560 citations
Fast Parallel Algorithms for Short-Range Molecular Dynamics
Journal of Computational Physics · 1995 · 43,820 citations
A smooth particle mesh Ewald method
The Journal of Chemical Physics · 1995 · 22,460 citations
Particle mesh Ewald: An <i>N</i>⋅log(<i>N</i>) method for Ewald sums in large systems
The Journal of Chemical Physics · 1993 · 30,035 citations
A fast algorithm for particle simulations
Journal of Computational Physics · 1987 · 4,869 citations
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