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H3K9 and H3K14 acetylation co-occur at many gene regulatory elements, while H3K14ac marks a subset of inactive inducible promoters in mouse embryonic stem cells

BMC Genomics · 2012 · Vol. 13(1) · pp. 424–424
Krishanpal KarmodiyaArnaud KrebsMustapha Oulad‐AbdelghaniHiroshi KimuraLàszlò Tora

Abstract

Our study suggests that chromatin modifications, such as H3K9ac and H3K14ac, are part of the active promoter state, are present over bivalent promoters and active enhancers and that the extent of H3K9 and H3K14 acetylation could be driven by cis regulatory elements such as CpG content at promoters. Our study also suggests that a subset of inactive promoters is selectively and specifically enriched for H3K14ac. This observation suggests that histone acetyl transferases (HATs) prime inactive genes by H3K14ac for stimuli dependent activation. In conclusion our study demonstrates a wider role for H3K9ac and H3K14ac in gene regulation than originally thought.

Genomics and Chromatin DynamicsEpigenetics and DNA MethylationRNA Interference and Gene DeliveryH3K4me3PromoterNucleosomeHistoneBiologyEnhancerChromatinHistone H3Molecular biologyCell biology

MeSH terms

AcetylationAnimalsHistonesPromoter Regions, GeneticCpG IslandsRegulatory Elements, TranscriptionalMiceHistone AcetyltransferasesEmbryonic Stem CellsEpigenomics

Funding

  • Agence Nationale de la Recherche
  • Institut National de la Santé et de la Recherche Médicale
  • Centre National de la Recherche Scientifique
Citations
533
FWCI
8.59
field-weighted impact
References
52
Percentile
99%
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Citations per year
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References
Histone H3K27ac separates active from poised enhancers and predicts developmental state
Proceedings of the National Academy of Sciences · 2010 · 4,451 citations
Chromatin signatures of pluripotent cell lines
Nature Cell Biology · 2006 · 1,338 citations
CpG islands and the regulation of transcription
Genes & Development · 2011 · 3,188 citations
The Human Genome Browser at UCSC
Genome Research · 2002 · 10,897 citations
Model-based Analysis of ChIP-Seq (MACS)
Genome biology · 2008 · 19,514 citations
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