article Open AccessTop 10% cited
Interactive metagenomic visualization in a Web browser
BMC Bioinformatics · 2011 · Vol. 12(1) · pp. 385–385
Abstract
Krona is both a powerful metagenomic visualization tool and a demonstration of the potential of HTML5 for highly accessible bioinformatic visualizations. Its rich and interactive displays facilitate more informed interpretations of metagenomic analyses, while its implementation as a browser-based application makes it extremely portable and easily adopted into existing analysis packages. Both the Krona rendering code and conversion tools are freely available under a BSD open-source license, and available from: http://krona.sourceforge.net.
Genomics and Phylogenetic StudiesGene expression and cancer classificationBioinformatics and Genomic NetworksMetagenomicsComputer sciencePlug-inVisualizationJavaScriptHTML5Data visualizationWeb applicationWorld Wide WebSoftware
MeSH terms
HumansSoftwareComputational BiologyInternetGastrointestinal TractMetagenomics
Funding
- U.S. Department of Homeland Security
Citations
2,185
FWCI
10.38
field-weighted impact
References
26
Percentile
99%
vs. same field & year
Citations per year
Cited by
Fast and sensitive taxonomic classification for metagenomics with Kaiju
Nature Communications · 2016 · 2,200 citations
Bacterial census of poultry intestinal microbiome
Poultry Science · 2013 · 536 citations
Kraken: ultrafast metagenomic sequence classification using exact alignments
Genome biology · 2014 · 4,784 citations
References
The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
BMC Bioinformatics · 2008 · 3,642 citations
A Primer on Metagenomics
PLoS Computational Biology · 2010 · 695 citations
Basic local alignment search tool
Journal of Molecular Biology · 1990 · 93,570 citations
Database resources of the National Center for Biotechnology Information: update
Nucleic Acids Research · 2003 · 11,003 citations
MEGAN analysis of metagenomic data
Genome Research · 2007 · 3,436 citations
A human gut microbial gene catalogue established by metagenomic sequencing
Nature · 2010 · 11,497 citations
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
Genome biology · 2010 · 3,516 citations
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
Applied and Environmental Microbiology · 2007 · 20,269 citations
Citation Network
How this paper connects to the literature. Drag to explore, click any node to open that paper.
