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Combining Quantum Mechanics Methods with Molecular Mechanics Methods in ONIOM

Journal of Chemical Theory and Computation · 2006 · Vol. 2(3) · pp. 815–826
Thom VrevenK. Suzie ByunIstván KomáromiStefan DapprichJohn A. MontgomeryKeiji MorokumaMichael J. Frisch

Abstract

The purpose of this paper is 2-fold. First, we present several extensions to the ONIOM(QM:MM) scheme. In its original formulation, the electrostatic interaction between the regions is included at the classical level. Here we present the extension to electronic embedding. We show how the behavior of ONIOM with electronic embedding can be more stable than QM/MM with electronic embedding. We also investigate the link atom correction, which is implicit in ONIOM but not in QM/MM. Second, we demonstrate some of the practical aspects of ONIOM(QM:MM) calculations. Specifically, we show that the potential surface can be discontinuous when there is bond breaking and forming closer than three bonds from the MM region.

Advanced Chemical Physics StudiesMolecular Junctions and NanostructuresSpectroscopy and Quantum Chemical StudiesONIOMEmbeddingQM/MMMolecular mechanicsQuantum chemicalAtom (system on chip)Computational chemistryChemistryPhysicsQuantum mechanics
Citations
956
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25.92
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38
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Cited by
QM/MM Methods for Biomolecular Systems
Angewandte Chemie International Edition · 2009 · 2,657 citations
References
A fast algorithm for particle simulations
Journal of Computational Physics · 1987 · 4,869 citations
Hybrid Models for Combined Quantum Mechanical and Molecular Mechanical Approaches
The Journal of Physical Chemistry · 1996 · 1,257 citations
A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules
Journal of the American Chemical Society · 1995 · 13,076 citations
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