article Open AccessTop 1% cited
Differential abundance analysis for microbial marker-gene surveys
Nature Methods · 2013 · Vol. 10(12) · pp. 1200–1202
Joseph N. Paulson✉(Applied Mathematics (United States))O. Colin Stine(University of Maryland, Baltimore)Héctor Corrada Bravo(Applied Mathematics (United States))Mihai Pop(Applied Mathematics (United States))
Gut microbiota and healthGene expression and cancer classificationGenomics and Phylogenetic StudiesNormalization (sociology)UndersamplingBioconductorComputational biologyData miningComputer scienceMarker geneBiologyGeneArtificial intelligence
MeSH terms
AlgorithmsAnimalsComputer SimulationGenetic MarkersHumansIntestinesModels, GeneticPhenotypeRNA, Ribosomal, 16SSoftwareGenetic VariationModels, StatisticalCluster AnalysisNormal DistributionSequence Analysis, DNA
Citations
2,585
FWCI
27.81
field-weighted impact
References
29
Percentile
100%
vs. same field & year
Citations per year
Cited by
Disease Suppressive Soils: New Insights from the Soil Microbiome
Phytopathology · 2017 · 587 citations
Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible
PLoS Computational Biology · 2014 · 3,022 citations
Analysis of compositions of microbiomes with bias correction
Nature Communications · 2020 · 2,128 citations
Multivariable association discovery in population-scale meta-omics studies
PLoS Computational Biology · 2021 · 2,289 citations
Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data
Nature Protocols · 2020 · 1,775 citations
Characterization of the Gut Microbiome Using 16S or Shotgun Metagenomics
Frontiers in Microbiology · 2016 · 917 citations
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
Nature Protocols · 2016 · 7,457 citations
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision
The ISME Journal · 2016 · 850 citations
References
Comparisons of Subgingival Microbial Profiles of Refractory Periodontitis, Severe Periodontitis, and Periodontal Health Using the Human Oral Microbe Identification Microarray
Journal of Periodontology · 2009 · 561 citations
Microbial Co-occurrence Relationships in the Human Microbiome
PLoS Computational Biology · 2012 · 1,565 citations
Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples
PLoS Computational Biology · 2009 · 1,639 citations
Bacterial Diversity in Human Subgingival Plaque
Journal of Bacteriology · 2001 · 2,007 citations
QIIME allows analysis of high-throughput community sequencing data
Nature Methods · 2010 · 35,655 citations
Inferring Correlation Networks from Genomic Survey Data
PLoS Computational Biology · 2012 · 2,815 citations
<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data
Bioinformatics · 2009 · 43,721 citations
Metagenomic biomarker discovery and explanation
Genome biology · 2011 · 16,223 citations
Citation Network
How this paper connects to the literature. Drag to explore, click any node to open that paper.
