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PLUMED: A portable plugin for free-energy calculations with molecular dynamics

Computer Physics Communications · 2009 · Vol. 180(10) · pp. 1961–1972
Massimiliano BonomiDavide BranduardiGiovanni BussiCarlo CamilloniDavide ProvasiPaolo RaiteriDavide DonadioFabrizio MarinelliFabio PietrucciRicardo A. BrogliaMichele Parrinello
Theoretical and Computational PhysicsProtein Structure and DynamicsSpectroscopy and Quantum Chemical StudiesMetadynamicsFortranComputer sciencePlug-inMolecular dynamicsComputational scienceSimple (philosophy)SoftwareFocus (optics)Statistical physics
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References
GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation
Journal of Chemical Theory and Computation · 2008 · 15,846 citations
Simulated Tempering: A New Monte Carlo Scheme
Europhysics Letters (EPL) · 1992 · 1,806 citations
All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins
The Journal of Physical Chemistry B · 1998 · 14,418 citations
Replica-exchange molecular dynamics method for protein folding
Chemical Physics Letters · 1999 · 4,578 citations
The calculation of the potential of mean force using computer simulations
Computer Physics Communications · 1995 · 1,750 citations
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