article Open AccessTop 1% cited
PLUMED: A portable plugin for free-energy calculations with molecular dynamics
Computer Physics Communications · 2009 · Vol. 180(10) · pp. 1961–1972
Massimiliano Bonomi✉(ETH Zurich)Davide Branduardi(ETH Zurich)Giovanni Bussi(University of Modena and Reggio Emilia)Carlo Camilloni(University of Milan)Davide Provasi(Icahn School of Medicine at Mount Sinai)Paolo RaiteriDavide Donadio(University of California, Davis)Fabrizio Marinelli(Scuola Internazionale Superiore di Studi Avanzati)Fabio Pietrucci(Scuola Internazionale Superiore di Studi Avanzati)Ricardo A. Broglia(University of Milan)Michele Parrinello(ETH Zurich)
Theoretical and Computational PhysicsProtein Structure and DynamicsSpectroscopy and Quantum Chemical StudiesMetadynamicsFortranComputer sciencePlug-inMolecular dynamicsComputational scienceSimple (philosophy)SoftwareFocus (optics)Statistical physics
Citations
1,878
FWCI
38.03
field-weighted impact
References
48
Percentile
100%
vs. same field & year
Citations per year
Cited by
ACEMD: Accelerating Biomolecular Dynamics in the Microsecond Time Scale
Journal of Chemical Theory and Computation · 2009 · 945 citations
Using collective variables to drive molecular dynamics simulations
Molecular Physics · 2013 · 1,063 citations
Advanced capabilities for materials modelling with Quantum ESPRESSO
Journal of Physics Condensed Matter · 2017 · 7,184 citations
PLUMED 2: New feathers for an old bird
Computer Physics Communications · 2013 · 3,610 citations
CP2K: An electronic structure and molecular dynamics software package - Quickstep: Efficient and accurate electronic structure calculations
The Journal of Chemical Physics · 2020 · 3,821 citations
References
GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation
Journal of Chemical Theory and Computation · 2008 · 15,846 citations
Simulated Tempering: A New Monte Carlo Scheme
Europhysics Letters (EPL) · 1992 · 1,806 citations
Nonphysical sampling distributions in Monte Carlo free-energy estimation: Umbrella sampling
Journal of Computational Physics · 1977 · 6,115 citations
Quickstep: Fast and accurate density functional calculations using a mixed Gaussian and plane waves approach
Computer Physics Communications · 2005 · 5,572 citations
All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins
The Journal of Physical Chemistry B · 1998 · 14,418 citations
Replica-exchange molecular dynamics method for protein folding
Chemical Physics Letters · 1999 · 4,578 citations
The calculation of the potential of mean force using computer simulations
Computer Physics Communications · 1995 · 1,750 citations
Parallel tempering algorithm for conformational studies of biological molecules
Chemical Physics Letters · 1997 · 994 citations
Citation Network
How this paper connects to the literature. Drag to explore, click any node to open that paper.
