article
Hoover <i>NPT</i> dynamics for systems varying in shape and size
Molecular Physics · 1993 · Vol. 78(3) · pp. 533–544
Simone Melchionna✉(Sapienza University of Rome)Giovanni Ciccotti(Sapienza University of Rome)Brad Lee Holian(Los Alamos National Laboratory)
Abstract
In this paper we write down equations of motion (following the approach pioneered by Hoover) for an exact isothermal-isobaric molecular dynamics simulation, and we extend them to multiple thermostating rates, to a shape-varying cell and to molecular systems, coherently with the previous ‘extended system method’. An integration scheme is proposed together with a numerical illustration of the method.
Protein Structure and DynamicsSpectroscopy and Quantum Chemical StudiesNanopore and Nanochannel Transport StudiesMolecular dynamicsDynamics (music)Equations of motionIsothermal processIsobaric processNumerical integrationMotion (physics)Statistical physicsScheme (mathematics)Computer science
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1,111
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