article Open AccessTop 1% cited
Automated generation of heuristics for biological sequence comparison
BMC Bioinformatics · 2005 · Vol. 6(1) · pp. 31–31
Guy Slater✉(Wellcome Trust)Ewan Birney(Wellcome Trust)
Abstract
This system allows rapid implementation of heuristics approximating to many complex alignment models, and has been incorporated into the freely available sequence alignment program, exonerate.
Genomics and Phylogenetic StudiesGenome Rearrangement AlgorithmsProtein Structure and DynamicsHeuristicsComputational biologyDNA microarrayComputer scienceSequence (biology)BiologyGeneticsGene
MeSH terms
AlgorithmsArtificial IntelligenceAutomationComputer SimulationDNAHumansMathematical ComputingModels, BiologicalModels, TheoreticalRNA, MessengerSoftwareDatabases, FactualInformation Storage and RetrievalSequence AlignmentGenome
Citations
3,107
FWCI
14.00
field-weighted impact
References
33
Percentile
99%
vs. same field & year
Citations per year
Cited by
Next-Generation Sequencing: From Basic Research to Diagnostics
Clinical Chemistry · 2009 · 819 citations
Uncovering the novel characteristics of Asian honey bee, Apis cerana, by whole genome sequencing
BMC Genomics · 2015 · 1,258 citations
Phytozome: a comparative platform for green plant genomics
Nucleic Acids Research · 2011 · 5,646 citations
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
Genome biology · 2008 · 4,327 citations
Next-generation DNA sequencing
Nature Biotechnology · 2008 · 4,469 citations
Finding the missing honey bee genes: lessons learned from a genome upgrade
BMC Genomics · 2014 · 452 citations
GENCODE: The reference human genome annotation for The ENCODE Project
Genome Research · 2012 · 5,001 citations
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
Genome Research · 2012 · 5,182 citations
References
Basic local alignment search tool
Journal of Molecular Biology · 1990 · 93,570 citations
An improved algorithm for matching biological sequences
Journal of Molecular Biology · 1982 · 1,751 citations
Identification of common molecular subsequences
Journal of Molecular Biology · 1981 · 10,021 citations
Efficient string matching
Communications of the ACM · 1975 · 2,924 citations
GeneWise and Genomewise
Genome Research · 2004 · 3,009 citations
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Nucleic Acids Research · 1997 · 74,154 citations
Citation Network
How this paper connects to the literature. Drag to explore, click any node to open that paper.
